Full Link:
STRINGSTRING
slr1420 slr1420 prs prs slr1419 slr1419 slr0076 slr0076 slr1417 slr1417 cefD cefD csd csd slr0074 slr0074 SYNGTS_0100 SYNGTS_0100 slr0075 slr0075 SYNGTS_2145 SYNGTS_2145
"slr1419" - Hypothetical protein in Synechocystis sp. PCC6803
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slr1419Hypothetical protein (159 aa)    
Predicted Functional Partners:
slr0075
ABC transporter subunit Ycf16 (256 aa)
 
 
  0.986
csd
NifS protein; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine (420 aa)
 
  0.982
cefD
Isopenicillin N epimerase (401 aa)
   
  0.974
slr0074
Fe-S assembly protein SufB (480 aa)
 
 
  0.945
slr1417
Hypothetical protein (118 aa)
   
   
  0.943
slr1420
Hypothetical protein (425 aa)
              0.859
slr0076
Hypothetical protein (453 aa)
 
 
  0.783
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of ribose 1,5-bisphosphate. Catalyzes the transfer of pyrophosphoryl group from ATP to ribose- 5-phosphate to yield phosphoribosyl diphosphate (PRPP) and AMP (333 aa)
     
      0.744
SYNGTS_2145
NifS protein (386 aa)
   
 
  0.694
SYNGTS_0100
NifS protein (391 aa)
   
 
  0.694
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
Server load: low (2%)