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STRINGSTRING
sll0484 sll0484 sll1481 sll1481 sml0011 sml0011 sll1483 sll1483 sll1482 sll1482 ssl0105 ssl0105 slr1122 slr1122 sll1340 sll1340 slr1990 slr1990 sll1071 sll1071 sll0185 sll0185
"sll1482" - ABC-transporter DevC homolog in Synechocystis sp. PCC6803
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sll1482ABC-transporter DevC homolog (383 aa)    
Predicted Functional Partners:
sll1481
ABC-transporter DevB homolog (451 aa)
 
          0.957
sll0484
ABC transporter (245 aa)
 
     
  0.842
sml0011
Hypothetical protein (107 aa)
   
          0.696
sll1340
Hypothetical protein (100 aa)
   
          0.680
slr1122
Hypothetical protein (250 aa)
   
          0.670
ssl0105
Hypothetical protein (88 aa)
   
          0.650
slr1990
Hypothetical protein (240 aa)
   
          0.630
sll0185
Hypothetical protein (419 aa)
   
          0.594
sll1071
Hypothetical protein (275 aa)
   
          0.577
sll1483
Transforming growth factor induced protein (180 aa)
              0.571
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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