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STRINGSTRING
ank ank slr0356 slr0356 slr0455 slr0455 slr1977 slr1977 sll0513 sll0513 slr0454 slr0454 sll0436 sll0436 slr1266 slr1266 slr1270 slr1270 sll0180 sll0180 sll1053 sll1053
"slr0454" - Cation or drug efflux system protein in Synechocystis sp. PCC6803
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slr0454Cation or drug efflux system protein (909 aa)    
Predicted Functional Partners:
sll1053
Hypothetical protein (520 aa)
 
   
  0.783
ank
Erythroid ankyrin (441 aa)
   
      0.750
slr1977
Hypothetical protein (244 aa)
 
          0.746
slr1270
Hypothetical protein (526 aa)
 
  0.705
slr0455
Hypothetical protein (141 aa)
              0.671
sll0513
Hypothetical protein (277 aa)
 
          0.632
sll0436
Hypothetical protein (151 aa)
              0.610
sll0180
Hypothetical protein (501 aa)
 
   
  0.596
slr0356
Hypothetical protein (196 aa)
   
          0.590
slr1266
Hypothetical protein (185 aa)
   
          0.588
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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