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kpsT kpsT SYNGTS_3144 SYNGTS_3144 SYNGTS_0324 SYNGTS_0324 slr0980 slr0980 sll0574 sll0574 slr0977 slr0977 cyp120 cyp120 gumB gumB ssr2802 ssr2802 slr0978 slr0978 slr0981 slr0981
"sll0574" - Probable lipopolysaccharide ABC transporter permease protein in Synechocystis sp. PCC6803
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sll0574Probable lipopolysaccharide ABC transporter permease protein (271 aa)    
Predicted Functional Partners:
SYNGTS_0324
ABC transporter (430 aa)
 
  0.999
SYNGTS_3144
ATP-binding protein (254 aa)
 
  0.999
kpsT
Probable polysaccharide ABC transporter ATP-binding protein (371 aa)
 
  0.994
cyp120
Cytochrome P450 (444 aa)
         
  0.941
slr0980
Hypothetical protein (143 aa)
           
  0.940
slr0978
Hypothetical protein (135 aa)
           
  0.940
gumB
GumB protein (504 aa)
   
   
  0.929
ssr2802
ABC transporter (53 aa)
 
  0.903
slr0981
Hypothetical protein (187 aa)
           
  0.897
slr0977
ABC transporter (276 aa)
   
   
0.891
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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