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VPS11 VPS11 VPS41 VPS41 SEC6 SEC6 VPS18 VPS18 VPS39 VPS39 VCL1 VCL1 VPS33 VPS33 COG4 COG4 SYP4 SYP4 SYP1 SYP1 SYP3 SYP3
"VPS33" - SM/Sec1-family protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS33SM/Sec1-family protein (740 aa)    
Predicted Functional Partners:
VPS41
Vacuolar assembly protein (910 aa)
     
 
  0.990
VPS18
Subunit of the VPS-C complex (1029 aa)
     
 
  0.989
VCL1
VPS16-like protein (849 aa)
     
 
  0.986
VPS11
Subunit of VPS-C complex (1102 aa)
     
 
  0.978
VPS39
Subunit of VPS-C complex (812 aa)
     
 
  0.959
COG4
Component of oligomeric golgi complex 4 (1094 aa)
     
  0.934
SYP3
Qa-SNARE protein, Sed5/Syntaxin5-family (339 aa)
     
  0.933
SYP1
Qa-SNARE Sso1/Syntaxin1, PM-type (311 aa)
       
  0.930
SEC6
Component of the exocyst complex (763 aa)
     
  0.908
SYP4
Qa-SNARE protein, Tlg2/Syntaxin16-family (309 aa)
     
  0.904
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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