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STRINGSTRING
EDP02031 EDP02031 EDP08387 EDP08387 EDP08753 EDP08753 EDP08751 EDP08751 EDP08752 EDP08752 EDP09275 EDP09275 SSA7 SSA7 EDO97006 EDO97006 PAP1 PAP1 EDP05541 EDP05541 EDP05271 EDP05271
"EDO97006" - Subunit of mRNA cleavage and polyadenylation specificity factor in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDO97006Subunit of mRNA cleavage and polyadenylation specificity factor (690 aa)    
Predicted Functional Partners:
EDP05541
Predicted protein (389 aa)
   
0.998
EDP08752
Predicted protein (366 aa)
     
  0.996
EDP08753
Predicted protein (279 aa)
     
  0.996
EDP08387
Predicted protein (517 aa)
     
  0.996
EDP02031
Predicted protein (199 aa)
       
  0.989
SSA7
Predicted protein (765 aa)
     
  0.987
EDP05271
RNA processing protein (511 aa)
     
  0.984
PAP1
Poly(a) polymerase (407 aa)
     
  0.984
EDP08751
Predicted protein (461 aa)
     
  0.982
EDP09275
Predicted protein (73 aa)
     
  0.982
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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