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STRINGSTRING
ERD2A ERD2A SEC22 SEC22 EDP07241 EDP07241 COPG1 COPG1 SEC13 SEC13 SYP3 SYP3 EDO97416 EDO97416 SEC24C SEC24C SEC23A SEC23A SEC24A SEC24A SAR1 SAR1
"EDO97416" - Emp24/gp25L/p24 family protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDO97416Emp24/gp25L/p24 family protein (206 aa)    
Predicted Functional Partners:
EDP07241
Cmp24/gp25L/p24 family protein (212 aa)
     
0.991
SEC13
COP-II coat subunit (299 aa)
     
  0.797
SYP3
Qa-SNARE protein, Sed5/Syntaxin5-family (339 aa)
     
  0.758
SEC22
R-SNARE protein, Sec22-family (219 aa)
     
  0.750
COPG1
Gamma-cop; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (883 aa)
     
  0.745
SEC24A
COP-II coat subunit (820 aa)
     
  0.732
SEC24C
COP-II coat subunit (825 aa)
     
  0.732
SAR1
Sar-type small GTPase (192 aa)
     
  0.729
ERD2A
KDEL receptor A (216 aa)
     
 
  0.728
SEC23A
COP-II coat subunit (762 aa)
     
  0.727
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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