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STRINGSTRING
EDP00357 EDP00357 PUS4 PUS4 LCI33 LCI33 EDO98155 EDO98155 EDP05143 EDP05143 GTR12 GTR12 EDP01218 EDP01218
"EDO98155" - Predicted protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDO98155Predicted protein (234 aa)    
Predicted Functional Partners:
PUS4
tRNA pseudouridine synthase (287 aa)
     
        0.522
LCI33
low-CO2-inducible protein (886 aa)
     
        0.480
EDP01218
Predicted protein (181 aa)
     
        0.476
EDP00357
Predicted protein (143 aa)
     
        0.460
GTR12
Glycosyl transferase (3180 aa)
     
        0.456
EDP05143
Predicted protein (1459 aa)
     
        0.411
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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