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STRINGSTRING
EDP00640 EDP00640 SRP35 SRP35 PRP19 PRP19 PRP17 PRP17 EDP05779 EDP05779 EDO99637 EDO99637 EDP03322 EDP03322 SRP36 SRP36 EDP06779 EDP06779 SPL8 SPL8 EDP01159 EDP01159
"EDO99637" - Predicted protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDO99637Predicted protein (462 aa)    
Predicted Functional Partners:
EDP03322
Predicted protein (811 aa)
     
 
  0.965
EDP01159
Predicted protein (170 aa)
     
 
  0.953
EDP00640
Predicted protein (169 aa)
     
 
  0.953
PRP17
Nuclear pre-mRNA splicing factor, component of the spliceosome (313 aa)
     
 
  0.949
EDP05779
Predicted protein (150 aa)
     
 
  0.939
PRP19
Spliceosome component, nuclear pre-mRNA splicing factor (503 aa)
     
 
  0.913
SRP36
SR protein factor (320 aa)
     
 
  0.779
SRP35
SR protein factor (338 aa)
     
 
  0.773
SPL8
U2 snRNP auxiliary factor, large subunit (306 aa)
     
 
  0.758
EDP06779
U2 snRNP auxiliary factor, large subunit (309 aa)
       
 
  0.752
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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