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STRINGSTRING
PAP2 PAP2 PAP1 PAP1 POL1A POL1A EDP01828 EDP01828 TRF4 TRF4 EDP01779 EDP01779 EDP01505 EDP01505 MTR4 MTR4 MUT68 MUT68 XRN1 XRN1 RRP40 RRP40
"TRF4" - Trf4 poly(A) polymerase in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRF4Trf4 poly(A) polymerase (1144 aa)    
Predicted Functional Partners:
MTR4
DEAD-box family ATP dependent helicase (945 aa)
     
 
  0.976
PAP1
Poly(a) polymerase (407 aa)
     
 
  0.907
MUT68
Polyadenylate polymerase beta nucleotidyltransferase (711 aa)
     
   
  0.900
EDP01505
Predicted protein (299 aa)
     
 
  0.881
EDP01828
Hypothetical protein (397 aa)
     
 
 
0.856
POL1A
PolI-like DNA polymerase (498 aa)
     
 
  0.846
EDP01779
Predicted protein (1143 aa)
     
 
  0.833
PAP2
Poly(a) polymerase (517 aa)
     
 
0.829
XRN1
Single-stranded RNA 5’->3’ exonuclease (171 aa)
     
 
  0.823
RRP40
3’-5’ exonuclease component of the exosome (231 aa)
     
   
  0.814
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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