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RABG1 RABG1 EDP07916 EDP07916 VPS26 VPS26 VPS5A VPS5A VPS36 VPS36 VPS29 VPS29 VPS5C VPS5C VPS35 VPS35 VPS25 VPS25 MAP2 MAP2 VSR1 VSR1
"VPS29" - Subunit of retromer complex in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS29Subunit of retromer complex (188 aa)    
Predicted Functional Partners:
VPS35
Subunit of retromer complex (739 aa)
     
  0.998
VPS26
Subunit of retromer complex (320 aa)
     
  0.991
VPS5A
Subunit of retromer complex (410 aa)
     
  0.973
VPS5C
Subunit of retromer complex (747 aa)
     
  0.971
EDP07916
Predicted protein (411 aa)
     
  0.907
VSR1
Vacuolar sorting receptor (700 aa)
           
  0.815
VPS36
Subunit of ESCRT-II complex (701 aa)
     
 
  0.789
VPS25
Subunit of ESCRT-II complex (175 aa)
     
 
  0.788
MAP2
Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val) (510 aa)
           
  0.767
RABG1
Small rab-related GTPase (206 aa)
     
 
  0.730
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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