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STRINGSTRING
EDP00505 EDP00505 CDT1 CDT1 FA1 FA1 ORC1 ORC1 POLA2 POLA2 EDP07451 EDP07451 POLA1 POLA1 CDC6 CDC6 EDP01165 EDP01165 EDP00596 EDP00596 EDP02379 EDP02379
"CDT1" - DNA replication initiation factor in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDT1DNA replication initiation factor (1103 aa)    
Predicted Functional Partners:
POLA1
DNA polymerase alpha subunit one (1114 aa)
     
   
  0.913
EDP00596
Predicted protein (511 aa)
     
        0.706
CDC6
Pre-initiation complex, subunit CDC6 (940 aa)
     
        0.703
EDP00505
Predicted protein (841 aa)
     
        0.698
ORC1
Origin recognition complex subunit 1 (890 aa)
     
        0.689
EDP02379
Predicted protein (1210 aa)
     
        0.688
EDP01165
Predicted protein (1162 aa)
     
        0.686
FA1
Flagellar autotomy protein 1 (1787 aa)
     
        0.685
POLA2
DNA polymerase alpha subunit two (722 aa)
     
        0.683
EDP07451
Predicted protein (746 aa)
     
        0.672
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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