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STRINGSTRING
EDP06361 EDP06361 PRP6 PRP6 SPL2 SPL2 SMP1 SMP1 PRP19 PRP19 PRP8 PRP8 SMP11 SMP11 EDP00856 EDP00856 SPL5 SPL5 LSM2 LSM2 SPL3 SPL3
"EDP06361" - Predicted protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP06361Predicted protein (154 aa)    
Predicted Functional Partners:
PRP6
Splicing factor, component of the U4/U6-U5 snRNP complex (947 aa)
     
  0.970
EDP00856
Predicted protein (456 aa)
     
  0.969
PRP8
Splicing factor, component of the U5 snRNP and of the spliceosome (2346 aa)
     
  0.965
SPL5
pre-mRNA-splicing factor (488 aa)
     
  0.962
SPL3
SF3A3 splicing factor 3a, subunit 3 (508 aa)
     
  0.957
LSM2
Sm-D1 protein (93 aa)
     
  0.956
SMP11
Sm protein (100 aa)
       
  0.955
SMP1
Small nuclear ribonucleoprotein (127 aa)
     
  0.952
SPL2
Splicing factor 3a, subunit 2 (287 aa)
     
  0.946
PRP19
Spliceosome component, nuclear pre-mRNA splicing factor (503 aa)
   
0.943
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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