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STRINGSTRING
VPS20 VPS20 EDP09078 EDP09078 EDP04402 EDP04402 EDP08119 EDP08119 BCA3 BCA3 EDP07039 EDP07039 EDO98613 EDO98613 EDP01193 EDP01193 EDP04629 EDP04629 EDO97636 EDO97636 EDO97637 EDO97637
"EDP07039" - Predicted protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP07039Predicted protein (180 aa)    
Predicted Functional Partners:
EDO98613
Predicted protein (196 aa)
     
        0.658
EDP04402
Predicted protein (517 aa)
     
        0.591
EDP09078
Predicted protein (440 aa)
     
        0.527
EDO97637
Predicted protein (132 aa)
     
        0.526
EDP04629
Predicted protein (364 aa)
     
        0.522
EDP08119
Predicted protein (442 aa)
     
        0.514
VPS20
Subunit of ESCRT-III complex (232 aa)
     
        0.511
EDP01193
Predicted protein (551 aa)
     
        0.509
BCA3
Branched chain amino acid aminotransferase (544 aa)
     
        0.508
EDO97636
Predicted protein (141 aa)
     
        0.505
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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