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POPTR_0011s09940.1 POPTR_0011s09940.1 POPTR_0019s03830.1 POPTR_0019s03830.1 POPTR_0016s05060.1 POPTR_0016s05060.1 POPTR_0010s07700.1 POPTR_0010s07700.1 POPTR_0014s12670.1 POPTR_0014s12670.1 POPTR_0018s00490.1 POPTR_0018s00490.1 POPTR_0007s10250.1 POPTR_0007s10250.1 POPTR_0011s02990.1 POPTR_0011s02990.1 POPTR_0001s00420.1 POPTR_0001s00420.1 POPTR_0004s14520.1 POPTR_0004s14520.1 POPTR_0012s07130.1 POPTR_0012s07130.1
"POPTR_0001s00420.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s00420.1Predicted protein (255 aa)    
Predicted Functional Partners:
POPTR_0019s03830.1
Predicted protein (1018 aa)
     
   
  0.483
POPTR_0018s00490.1
Predicted protein (581 aa)
     
        0.470
POPTR_0016s05060.1
Cytochrome P450 [source-UniProtKB/TrEMBL;Acc-B9II27_POPTR] (527 aa)
     
        0.470
POPTR_0014s12670.1
Predicted protein (217 aa)
     
        0.470
POPTR_0012s07130.1
Predicted protein (91 aa)
     
        0.470
POPTR_0011s09940.1
Predicted protein (484 aa)
     
        0.470
POPTR_0011s02990.1
Predicted protein; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (292 aa)
     
        0.470
POPTR_0010s07700.1
Predicted protein (256 aa)
     
        0.470
POPTR_0007s10250.1
Uncharacterized protein (102 aa)
     
        0.470
POPTR_0004s14520.1
Predicted protein (74 aa)
     
        0.470
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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