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STRINGSTRING
POPTR_0007s03250.1 POPTR_0007s03250.1 POPTR_0017s07190.1 POPTR_0017s07190.1 POPTR_0017s07150.1 POPTR_0017s07150.1 POPTR_0016s13830.1 POPTR_0016s13830.1 POPTR_0017s00420.1 POPTR_0017s00420.1 POPTR_0001s11710.1 POPTR_0001s11710.1 POPTR_0007s00270.1 POPTR_0007s00270.1 POPTR_0001s03090.1 POPTR_0001s03090.1 POPTR_0014s08380.1 POPTR_0014s08380.1 POPTR_0006s02790.1 POPTR_0006s02790.1 POPTR_0002s16350.1 POPTR_0002s16350.1
"POPTR_0001s03090.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s03090.1Uncharacterized protein (93 aa)    
Predicted Functional Partners:
POPTR_0006s02790.1
Predicted protein (718 aa)
     
  0.973
POPTR_0014s08380.1
Predicted protein (1085 aa)
       
  0.971
POPTR_0002s16350.1
Annotation not available (972 aa)
       
  0.971
POPTR_0017s07190.1
Uncharacterized protein (385 aa)
     
 
  0.944
POPTR_0017s07150.1
Uncharacterized protein (246 aa)
     
 
  0.944
POPTR_0017s00420.1
Predicted protein (454 aa)
     
 
  0.944
POPTR_0007s03250.1
Predicted protein (444 aa)
     
 
  0.944
POPTR_0007s00270.1
Predicted protein (444 aa)
     
 
  0.944
POPTR_0016s13830.1
Uncharacterized protein (97 aa)
     
  0.884
POPTR_0001s11710.1
Uncharacterized protein (114 aa)
     
  0.845
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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