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POPTR_0004s10240.1 POPTR_0004s10240.1 POPTR_0001s05330.1 POPTR_0001s05330.1 POPTR_0014s03820.1 POPTR_0014s03820.1 POPTR_0002s13220.1 POPTR_0002s13220.1 POPTR_0018s07120.1 POPTR_0018s07120.1 POPTR_0008s06460.1 POPTR_0008s06460.1 POPTR_0010s20030.1 POPTR_0010s20030.1
"POPTR_0001s05330.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s05330.1Predicted protein; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding (898 aa)    
Predicted Functional Partners:
POPTR_0014s03820.1
Cytochrome P450 allene oxide synthase [source-UniProtKB/TrEMBL;Acc-B9MVH0_POPTR] (526 aa)
     
   
  0.632
POPTR_0002s13220.1
Cytochrome P450 allene oxide synthase [source-UniProtKB/TrEMBL;Acc-B9GP05_POPTR] (526 aa)
     
   
  0.632
POPTR_0004s10240.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PCM3_POPTR] (251 aa)
     
   
  0.542
POPTR_0018s07120.1
Predicted protein (395 aa)
         
  0.503
POPTR_0010s20030.1
F-box family protein [source-UniProtKB/TrEMBL;Acc-B9HT08_POPTR] (574 aa)
           
  0.495
POPTR_0008s06460.1
F-box family protein [source-UniProtKB/TrEMBL;Acc-B9HHK9_POPTR] (573 aa)
           
  0.495
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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