Full Link:
STRINGSTRING
POPTR_0015s09340.1 POPTR_0015s09340.1 POPTR_0012s08510.1 POPTR_0012s08510.1 POPTR_0001s07780.1 POPTR_0001s07780.1 POPTR_0018s14000.1 POPTR_0018s14000.1 POPTR_0013s09180.1 POPTR_0013s09180.1 POPTR_0001s34990.1 POPTR_0001s34990.1 POPTR_0001s35000.1 POPTR_0001s35000.1 POPTR_0006s07560.1 POPTR_0006s07560.1
"POPTR_0001s07780.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s07780.1Predicted protein (194 aa)    
Predicted Functional Partners:
POPTR_0001s35000.1
Uncharacterized protein (288 aa)
           
  0.528
POPTR_0001s34990.1
Hypothetical protein (337 aa)
           
  0.528
POPTR_0013s09180.1
Predicted protein (428 aa)
           
  0.508
POPTR_0018s14000.1
Predicted protein (747 aa)
           
  0.429
POPTR_0006s07560.1
Predicted protein (813 aa)
           
  0.429
POPTR_0015s09340.1
Predicted protein (380 aa)
           
  0.424
POPTR_0012s08510.1
Annotation not available (355 aa)
           
  0.424
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (2%)