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POPTR_0015s10280.1 POPTR_0015s10280.1 POPTR_0004s03490.1 POPTR_0004s03490.1 POPTR_0001s40020.1 POPTR_0001s40020.1 POPTR_0012s09510.1 POPTR_0012s09510.1 POPTR_0012s07670.1 POPTR_0012s07670.1 POPTR_0011s11010.1 POPTR_0011s11010.1 POPTR_0001s08460.1 POPTR_0001s08460.1 POPTR_0010s19450.1 POPTR_0010s19450.1 POPTR_0005s12350.1 POPTR_0005s12350.1 POPTR_0007s13030.1 POPTR_0007s13030.1 POPTR_0008s07040.1 POPTR_0008s07040.1
"POPTR_0001s08460.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s08460.1Uncharacterized protein (229 aa)    
Predicted Functional Partners:
POPTR_0004s03490.1
Predicted protein (753 aa)
     
  0.979
POPTR_0007s13030.1
Predicted protein; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle (192 aa)
     
  0.951
POPTR_0005s12350.1
Predicted protein; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle (192 aa)
     
  0.951
POPTR_0012s07670.1
Predicted protein (576 aa)
     
  0.948
POPTR_0010s19450.1
Uncharacterized protein (93 aa)
     
  0.944
POPTR_0008s07040.1
Predicted protein (1929 aa)
     
  0.944
POPTR_0015s10280.1
Predicted protein (324 aa)
       
    0.942
POPTR_0012s09510.1
Predicted protein (311 aa)
       
    0.942
POPTR_0011s11010.1
Uncharacterized protein (544 aa)
     
  0.935
POPTR_0001s40020.1
Uncharacterized protein (82 aa)
     
  0.935
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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