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POPTR_0019s14520.1 POPTR_0019s14520.1 POPTR_0016s07720.1 POPTR_0016s07720.1 POPTR_0013s12760.1 POPTR_0013s12760.1 POPTR_0006s22620.1 POPTR_0006s22620.1 POPTR_0018s09020.1 POPTR_0018s09020.1 POPTR_0001s10040.1 POPTR_0001s10040.1 POPTR_0019s12210.1 POPTR_0019s12210.1 POPTR_0012s07920.1 POPTR_0012s07920.1 POPTR_0015s08420.1 POPTR_0015s08420.1 POPTR_0015s08430.1 POPTR_0015s08430.1 POPTR_0014s05070.1 POPTR_0014s05070.1
"POPTR_0001s10040.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s10040.1Predicted protein (254 aa)    
Predicted Functional Partners:
POPTR_0016s07720.1
Predicted protein (392 aa)
     
      0.769
POPTR_0006s22620.1
Predicted protein (340 aa)
     
      0.769
POPTR_0019s14520.1
Predicted protein (571 aa)
       
      0.769
POPTR_0019s12210.1
Predicted protein (197 aa)
       
  0.574
POPTR_0018s09020.1
Predicted protein (209 aa)
       
  0.574
POPTR_0015s08430.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002322119.1] (134 aa)
       
  0.574
POPTR_0015s08420.1
Annotation not available (111 aa)
       
  0.574
POPTR_0014s05070.1
Predicted protein (204 aa)
       
  0.574
POPTR_0013s12760.1
Predicted protein (197 aa)
       
  0.574
POPTR_0012s07920.1
Uncharacterized protein (134 aa)
       
  0.574
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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