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POPTR_0018s01370.1 POPTR_0018s01370.1 POPTR_0017s12800.1 POPTR_0017s12800.1 POPTR_0006s26610.1 POPTR_0006s26610.1 POPTR_0009s16660.1 POPTR_0009s16660.1 POPTR_0001s17370.1 POPTR_0001s17370.1 POPTR_0004s21400.1 POPTR_0004s21400.1 POPTR_0001s12960.1 POPTR_0001s12960.1 POPTR_0003s05880.1 POPTR_0003s05880.1 POPTR_0863s00200.1 POPTR_0863s00200.1 atpB atpB POPTR_0004s11790.1 POPTR_0004s11790.1
"POPTR_0001s12960.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s12960.1Predicted protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis (275 aa)    
Predicted Functional Partners:
POPTR_0004s21400.1
Predicted protein (343 aa)
 
  0.999
POPTR_0009s16660.1
Predicted protein (310 aa)
 
  0.999
atpB
F-ATPase subunit beta ; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits (217 aa)
     
 
  0.999
POPTR_0018s01370.1
Hypothetical protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain (100 aa)
     
  0.999
POPTR_0006s26610.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P8J8_POPTR]; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain (122 aa)
     
  0.999
POPTR_0003s05880.1
Predicted protein (163 aa)
     
 
  0.999
POPTR_0001s17370.1
Predicted protein (168 aa)
     
 
  0.999
POPTR_0863s00200.1
Uncharacterized protein (372 aa)
     
  0.996
POPTR_0017s12800.1
Predicted protein (527 aa)
     
  0.996
POPTR_0004s11790.1
Predicted protein (526 aa)
     
  0.996
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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