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POPTR_0014s07580.1 POPTR_0014s07580.1 POPTR_1018s00210.1 POPTR_1018s00210.1 POPTR_0015s11980.1 POPTR_0015s11980.1 POPTR_1018s00200.1 POPTR_1018s00200.1 POPTR_0675s00200.1 POPTR_0675s00200.1 POPTR_0001s15880.1 POPTR_0001s15880.1 POPTR_0015s12880.1 POPTR_0015s12880.1 POPTR_0013s13910.1 POPTR_0013s13910.1 POPTR_0015s05560.1 POPTR_0015s05560.1 POPTR_0015s09260.1 POPTR_0015s09260.1 POPTR_0014s07590.1 POPTR_0014s07590.1
"POPTR_0001s15880.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s15880.1Predicted protein (308 aa)    
Predicted Functional Partners:
POPTR_1018s00210.1
Predicted protein (302 aa)
       
  0.576
POPTR_1018s00200.1
Uncharacterized protein (124 aa)
       
  0.576
POPTR_0675s00200.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002328721.1] (302 aa)
       
  0.576
POPTR_0015s12880.1
Predicted protein (319 aa)
       
  0.576
POPTR_0015s11980.1
Predicted protein (313 aa)
       
  0.576
POPTR_0015s09260.1
Predicted protein (331 aa)
       
  0.576
POPTR_0015s05560.1
Predicted protein (379 aa)
       
  0.576
POPTR_0014s07590.1
Predicted protein (302 aa)
       
  0.576
POPTR_0014s07580.1
Predicted protein (300 aa)
       
  0.576
POPTR_0013s13910.1
Predicted protein (401 aa)
       
  0.576
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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