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POPTR_0003s06990.1 POPTR_0003s06990.1 POPTR_0008s00560.1 POPTR_0008s00560.1 POPTR_0010s12390.1 POPTR_0010s12390.1 POPTR_0008s12780.1 POPTR_0008s12780.1 POPTR_0010s26000.1 POPTR_0010s26000.1 POPTR_0001s16420.1 POPTR_0001s16420.1 POPTR_0008s13420.1 POPTR_0008s13420.1 POPTR_0010s11700.1 POPTR_0010s11700.1 POPTR_0019s11690.1 POPTR_0019s11690.1 POPTR_0013s12070.1 POPTR_0013s12070.1 POPTR_0001s16350.1 POPTR_0001s16350.1
"POPTR_0001s16420.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s16420.1Predicted protein (815 aa)    
Predicted Functional Partners:
POPTR_0010s11700.1
Predicted protein (725 aa)
     
  0.959
POPTR_0008s13420.1
Hypothetical protein (709 aa)
     
  0.959
POPTR_0003s06990.1
Predicted protein (1819 aa)
     
  0.936
POPTR_0001s16350.1
Predicted protein (1763 aa)
     
  0.936
POPTR_0013s12070.1
Predicted protein (1607 aa)
     
  0.935
POPTR_0019s11690.1
Predicted protein (1467 aa)
     
  0.933
POPTR_0010s12390.1
Phosphatidylinositol-4-phosphate 5-kinase family protein (1649 aa)
     
  0.933
POPTR_0008s12780.1
Predicted protein (1725 aa)
     
  0.933
POPTR_0010s26000.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PET4_POPTR] (623 aa)
     
      0.584
POPTR_0008s00560.1
Predicted protein (623 aa)
     
      0.584
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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