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POPTR_0005s02960.1 POPTR_0005s02960.1 POPTR_0005s02940.1 POPTR_0005s02940.1 POPTR_0010s08410.1 POPTR_0010s08410.1 POPTR_0005s11570.1 POPTR_0005s11570.1 POPTR_0002s08930.1 POPTR_0002s08930.1 POPTR_0001s17620.1 POPTR_0001s17620.1 POPTR_0005s16180.1 POPTR_0005s16180.1 POPTR_0010s20860.1 POPTR_0010s20860.1 POPTR_0001s45570.1 POPTR_0001s45570.1 POPTR_0011s00610.1 POPTR_0011s00610.1 POPTR_0018s09400.1 POPTR_0018s09400.1
"POPTR_0001s17620.1" - 2-oxoglutarate-dependent dioxygenase [source:UniProtKB/TrEMBL in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s17620.12-oxoglutarate-dependent dioxygenase [source-UniProtKB/TrEMBL;Acc-B9GL06_POPTR] (313 aa)    
Predicted Functional Partners:
POPTR_0010s20860.1
Uncharacterized protein (299 aa)
   
        0.523
POPTR_0005s16180.1
Predicted protein; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (899 aa)
     
   
  0.520
POPTR_0002s08930.1
Predicted protein; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (909 aa)
     
   
  0.518
POPTR_0005s11570.1
Flavanone 3-hydroxylase (F3H7), mRNA [source-RefSeq DNA_predicted;Acc-XM_002338838.1] (199 aa)
   
          0.510
POPTR_0010s08410.1
Predicted protein (379 aa)
   
          0.509
POPTR_0018s09400.1
2-oxoglutarate-dependent dioxygenase [source-UniProtKB/TrEMBL;Acc-B9ILT7_POPTR] (314 aa)
   
          0.508
POPTR_0011s00610.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PAA0_POPTR] (238 aa)
   
          0.508
POPTR_0001s45570.1
Predicted protein (260 aa)
   
          0.508
POPTR_0005s02960.1
Cytochrome P450 (CYP76G4), mRNA [source-RefSeq DNA_predicted;Acc-XM_002332594.1] (447 aa)
   
   
  0.503
POPTR_0005s02940.1
Cytochrome P450 (447 aa)
   
   
  0.503
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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