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POPTR_0006s07520.1 POPTR_0006s07520.1 POPTR_0019s05210.1 POPTR_0019s05210.1 POPTR_0018s13920.1 POPTR_0018s13920.1 POPTR_0015s08700.1 POPTR_0015s08700.1 POPTR_0001s18470.1 POPTR_0001s18470.1 POPTR_0015s00470.1 POPTR_0015s00470.1 POPTR_0012s00640.1 POPTR_0012s00640.1 POPTR_0015s08680.1 POPTR_0015s08680.1 POPTR_0006s23840.1 POPTR_0006s23840.1 POPTR_0012s01420.1 POPTR_0012s01420.1 POPTR_0012s08190.1 POPTR_0012s08190.1
"POPTR_0001s18470.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s18470.1Predicted protein (761 aa)    
Predicted Functional Partners:
POPTR_0015s08700.1
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9IER5_POPTR] (219 aa)
       
 
  0.667
POPTR_0015s08680.1
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9IER2_POPTR] (217 aa)
       
 
  0.667
POPTR_0012s08190.1
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9I398_POPTR] (216 aa)
       
 
  0.667
POPTR_0015s00470.1
Predicted protein (346 aa)
           
  0.641
POPTR_0012s00640.1
Predicted protein (340 aa)
           
  0.641
POPTR_0012s01420.1
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9I543_POPTR] (97 aa)
           
  0.586
POPTR_0006s23840.1
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9HD16_POPTR] (288 aa)
     
 
  0.534
POPTR_0018s13920.1
Predicted protein (727 aa)
           
  0.531
POPTR_0006s07520.1
Predicted protein (725 aa)
           
  0.531
POPTR_0019s05210.1
Uncharacterized protein (309 aa)
     
 
  0.528
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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