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POPTR_0001s06810.1 POPTR_0001s06810.1 POPTR_0013s03260.1 POPTR_0013s03260.1 POPTR_0016s05330.1 POPTR_0016s05330.1 POPTR_0006s05420.1 POPTR_0006s05420.1 POPTR_0001s37820.1 POPTR_0001s37820.1 POPTR_0001s20580.1 POPTR_0001s20580.1 POPTR_0005s04710.1 POPTR_0005s04710.1 POPTR_0013s01650.1 POPTR_0013s01650.1 POPTR_0001s25380.1 POPTR_0001s25380.1 POPTR_0001s06800.1 POPTR_0001s06800.1 POPTR_0001s06820.1 POPTR_0001s06820.1
"POPTR_0001s20580.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s20580.1Predicted protein (472 aa)    
Predicted Functional Partners:
POPTR_0016s05330.1
Uncharacterized protein (212 aa)
     
  0.998
POPTR_0006s05420.1
Predicted protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1132 aa)
     
  0.998
POPTR_0001s06820.1
Annotation not available (109 aa)
     
  0.998
POPTR_0001s06810.1
Annotation not available (699 aa)
     
  0.998
POPTR_0001s06800.1
DNA-directed RNA polymerase family protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (256 aa)
     
  0.998
POPTR_0013s01650.1
Predicted protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (117 aa)
     
  0.996
POPTR_0001s37820.1
Predicted protein (390 aa)
     
  0.994
POPTR_0013s03260.1
Predicted protein (561 aa)
     
 
  0.992
POPTR_0005s04710.1
Predicted protein (562 aa)
     
 
  0.992
POPTR_0001s25380.1
Predicted protein (102 aa)
     
  0.991
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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