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POPTR_0008s18370.1 POPTR_0008s18370.1 POPTR_0010s05990.1 POPTR_0010s05990.1 POPTR_0005s09500.1 POPTR_0005s09500.1 POPTR_0001s20800.1 POPTR_0001s20800.1 POPTR_0007s07700.1 POPTR_0007s07700.1 POPTR_0010s11820.1 POPTR_0010s11820.1 POPTR_0010s07710.1 POPTR_0010s07710.1 POPTR_0003s12920.1 POPTR_0003s12920.1 POPTR_0014s08160.1 POPTR_0014s08160.1 POPTR_0009s04830.1 POPTR_0009s04830.1 POPTR_0001s25680.1 POPTR_0001s25680.1
"POPTR_0001s20800.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s20800.1Predicted protein (591 aa)    
Predicted Functional Partners:
POPTR_0014s08160.1
Cytochrome P450 [source-UniProtKB/TrEMBL;Acc-B9I8K8_POPTR] (565 aa)
     
 
  0.931
POPTR_0003s12920.1
Cytochrome P450 [source-UniProtKB/TrEMBL;Acc-B9GWS9_POPTR] (550 aa)
     
 
  0.931
POPTR_0009s04830.1
Cytochrome P450 [source-UniProtKB/TrEMBL;Acc-A9PF77_POPTR] (511 aa)
         
  0.931
POPTR_0001s25680.1
Predicted protein (511 aa)
         
  0.931
POPTR_0010s05990.1
Cytochrome P450 [source-UniProtKB/TrEMBL;Acc-B9HTQ1_POPTR] (529 aa)
         
  0.928
POPTR_0008s18370.1
Cytochrome P450 [source-UniProtKB/TrEMBL;Acc-B9P527_POPTR] (503 aa)
         
  0.928
POPTR_0007s07700.1
Cytochrome P450 [source-UniProtKB/TrEMBL;Acc-B9HGL1_POPTR] (552 aa)
         
  0.928
POPTR_0005s09500.1
Cytochrome P450 [source-UniProtKB/TrEMBL;Acc-B9H5R8_POPTR] (554 aa)
         
  0.928
POPTR_0010s11820.1
Predicted protein (199 aa)
         
    0.900
POPTR_0010s07710.1
Predicted protein (239 aa)
         
    0.900
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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