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POPTR_0016s12260.1 POPTR_0016s12260.1 POPTR_0001s21740.1 POPTR_0001s21740.1 POPTR_0010s22790.1 POPTR_0010s22790.1 POPTR_0015s07340.1 POPTR_0015s07340.1 POPTR_0006s10040.1 POPTR_0006s10040.1 POPTR_0006s27030.1 POPTR_0006s27030.1 POPTR_0003s01450.1 POPTR_0003s01450.1 POPTR_0018s01720.1 POPTR_0018s01720.1 POPTR_0011s17170.1 POPTR_0011s17170.1 POPTR_0001s11600.1 POPTR_0001s11600.1 POPTR_0005s06420.1 POPTR_0005s06420.1
"POPTR_0001s21740.1" - Light-harvesting complex II protein Lhcb6Putative uncharacterized protein [source:UniProtKB/TrEMBL in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s21740.1Light-harvesting complex II protein Lhcb6Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PFP4_POPTR] (257 aa)    
Predicted Functional Partners:
POPTR_0006s27030.1
Predicted protein (130 aa)
     
   
  0.830
POPTR_0018s01720.1
Photosystem I reaction center subunit psaK family protein (130 aa)
     
   
  0.820
POPTR_0003s01450.1
Light-harvesting complex II protein Lhcb6Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGD4_POPTR] (334 aa)
     
 
 
0.805
POPTR_0010s22790.1
Light-harvesting complex I protein Lhca1 [source-UniProtKB/TrEMBL;Acc-B9HUE0_POPTR] (243 aa)
     
   
0.771
POPTR_0006s10040.1
Light-harvesting complex II protein Lhcb4 [source-UniProtKB/TrEMBL;Acc-B9HCM1_POPTR] (285 aa)
     
   
0.762
POPTR_0016s12260.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PFN3_POPTR] (283 aa)
     
   
0.759
POPTR_0001s11600.1
Putative uncharacterized protein (224 aa)
     
   
  0.755
POPTR_0011s17170.1
Putative uncharacterized protein (159 aa)
     
   
  0.736
POPTR_0015s07340.1
Light-harvesting complex I protein Lhca4 [source-UniProtKB/TrEMBL;Acc-B9N4C4_POPTR] (252 aa)
     
   
0.731
POPTR_0005s06420.1
Predicted protein (172 aa)
     
   
  0.724
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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