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POPTR_0014s09920.1 POPTR_0014s09920.1 POPTR_0019s03480.1 POPTR_0019s03480.1 POPTR_0016s06580.1 POPTR_0016s06580.1 POPTR_0017s07570.1 POPTR_0017s07570.1 POPTR_0017s06040.1 POPTR_0017s06040.1 POPTR_0001s22980.1 POPTR_0001s22980.1 POPTR_0015s13790.1 POPTR_0015s13790.1 POPTR_0013s07480.1 POPTR_0013s07480.1 POPTR_0016s12460.1 POPTR_0016s12460.1 POPTR_0016s03470.1 POPTR_0016s03470.1 POPTR_0014s09930.1 POPTR_0014s09930.1
"POPTR_0001s22980.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s22980.1Predicted protein (149 aa)    
Predicted Functional Partners:
POPTR_0019s03480.1
Predicted protein (276 aa)
       
  0.860
POPTR_0017s07570.1
Predicted protein (467 aa)
       
  0.860
POPTR_0017s06040.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002327927.1] (83 aa)
       
  0.860
POPTR_0016s12460.1
Calcium dependent protein kinase 13 [source-UniProtKB/TrEMBL;Acc-B9IGA3_POPTR] (431 aa)
       
  0.860
POPTR_0016s06580.1
Annotation not available (306 aa)
       
  0.860
POPTR_0016s03470.1
Predicted protein (578 aa)
       
  0.860
POPTR_0015s13790.1
Predicted protein (526 aa)
       
  0.860
POPTR_0014s09930.1
Annotation not available (222 aa)
       
  0.860
POPTR_0014s09920.1
Predicted protein (409 aa)
       
  0.860
POPTR_0013s07480.1
Predicted protein (85 aa)
       
  0.860
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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