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POPTR_0003s15790.1 POPTR_0003s15790.1 POPTR_0006s17810.1 POPTR_0006s17810.1 POPTR_0006s08140.1 POPTR_0006s08140.1 POPTR_0006s16110.1 POPTR_0006s16110.1 POPTR_0130s00210.1 POPTR_0130s00210.1 POPTR_0001s24600.1 POPTR_0001s24600.1 POPTR_0005s16540.1 POPTR_0005s16540.1 POPTR_0018s08770.1 POPTR_0018s08770.1 POPTR_0014s11090.1 POPTR_0014s11090.1 POPTR_0002s09330.1 POPTR_0002s09330.1 POPTR_0018s03090.1 POPTR_0018s03090.1
"POPTR_0001s24600.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s24600.1Predicted protein (736 aa)    
Predicted Functional Partners:
POPTR_0005s16540.1
Predicted protein (2268 aa)
     
  0.980
POPTR_0002s09330.1
Predicted protein (2276 aa)
     
  0.980
POPTR_0130s00210.1
Predicted protein (478 aa)
   
  0.788
POPTR_0018s08770.1
Predicted protein (477 aa)
   
  0.788
POPTR_0006s16110.1
Uncharacterized protein (478 aa)
   
  0.788
POPTR_0006s08140.1
Uncharacterized protein (67 aa)
   
  0.737
POPTR_0014s11090.1
Predicted protein (397 aa)
   
  0.734
POPTR_0018s03090.1
Predicted protein (292 aa)
   
  0.733
POPTR_0006s17810.1
Predicted protein (229 aa)
   
  0.733
POPTR_0003s15790.1
Predicted protein (498 aa)
   
  0.733
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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