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POPTR_0004s15170.1 POPTR_0004s15170.1 POPTR_0009s10940.1 POPTR_0009s10940.1 CNX5 CNX5 POPTR_0001s24800.1 POPTR_0001s24800.1 POPTR_0005s14210.1 POPTR_0005s14210.1 POPTR_0015s01950.1 POPTR_0015s01950.1 POPTR_0016s03630.1 POPTR_0016s03630.1 POPTR_0012s01860.1 POPTR_0012s01860.1 POPTR_0006s03660.1 POPTR_0006s03660.1 POPTR_0013s09940.1 POPTR_0013s09940.1 POPTR_0013s10990.1 POPTR_0013s10990.1
"POPTR_0001s24800.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s24800.1Predicted protein (374 aa)    
Predicted Functional Partners:
POPTR_0015s01950.1
Predicted protein (2228 aa)
     
   
  0.621
POPTR_0012s01860.1
Predicted protein (2230 aa)
     
   
  0.621
POPTR_0016s03630.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PE46_POPTR] (1472 aa)
     
   
  0.594
POPTR_0006s03660.1
Predicted protein (1628 aa)
     
   
  0.594
CNX5
Predicted protein; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers URM1 and MOCS2A. Its N-terminus first activates URM1 and MOCS2A as acyl-adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 and MOCS2A to form thiocarboxylation (-COSH) of their C-terminus. The reaction probably involves hydrogen sulfide that is generated from the pers [...] (464 aa)
   
   
  0.516
POPTR_0009s10940.1
Predicted protein (370 aa)
     
 
  0.499
POPTR_0005s14210.1
Predicted protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (361 aa)
     
 
  0.499
POPTR_0004s15170.1
Predicted protein (370 aa)
     
 
  0.499
POPTR_0013s10990.1
Predicted protein (426 aa)
   
        0.497
POPTR_0013s09940.1
Predicted protein (372 aa)
   
        0.497
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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