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POPTR_0002s04120.1 POPTR_0002s04120.1 POPTR_0018s12080.1 POPTR_0018s12080.1 POPTR_0006s20300.1 POPTR_0006s20300.1 POPTR_0010s12750.1 POPTR_0010s12750.1 POPTR_0008s12520.1 POPTR_0008s12520.1 POPTR_0009s05910.1 POPTR_0009s05910.1 POPTR_0014s11610.1 POPTR_0014s11610.1 POPTR_0004s13660.1 POPTR_0004s13660.1 POPTR_0001s25730.1 POPTR_0001s25730.1 POPTR_0005s24410.1 POPTR_0005s24410.1 POPTR_0004s06620.1 POPTR_0004s06620.1
"POPTR_0001s25730.1" - Putative uncharacterized protein [source:UniProtKB/TrEMBL in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s25730.1Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PBT1_POPTR] (494 aa)    
Predicted Functional Partners:
POPTR_0005s24410.1
Predicted protein (444 aa)
     
  0.998
POPTR_0004s06620.1
Hypothetical protein (629 aa)
     
  0.998
POPTR_0002s04120.1
Predicted protein (496 aa)
     
  0.998
POPTR_0009s05910.1
Predicted protein (814 aa)
     
0.997
POPTR_0018s12080.1
Predicted protein (726 aa)
   
  0.997
POPTR_0006s20300.1
Predicted protein (726 aa)
   
  0.997
POPTR_0004s13660.1
Predicted protein (761 aa)
   
  0.997
POPTR_0014s11610.1
Predicted protein (718 aa)
   
  0.996
POPTR_0010s12750.1
Predicted protein (228 aa)
     
  0.993
POPTR_0008s12520.1
Predicted protein; Component of the origin recognition complex (ORC) that binds origins of replication (431 aa)
     
  0.993
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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