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POPTR_0018s07650.1 POPTR_0018s07650.1 POPTR_0007s07910.1 POPTR_0007s07910.1 POPTR_0010s10230.1 POPTR_0010s10230.1 POPTR_0003s04150.1 POPTR_0003s04150.1 POPTR_0014s04860.1 POPTR_0014s04860.1 POPTR_0002s13940.1 POPTR_0002s13940.1 POPTR_0001s26260.1 POPTR_0001s26260.1 POPTR_0001s21640.1 POPTR_0001s21640.1 POPTR_0006s24220.1 POPTR_0006s24220.1 POPTR_0003s01570.1 POPTR_0003s01570.1 POPTR_0001s20480.1 POPTR_0001s20480.1
"POPTR_0001s26260.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s26260.1Predicted protein (205 aa)    
Predicted Functional Partners:
POPTR_0014s04860.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P9K6_POPTR] (152 aa)
     
  0.997
POPTR_0002s13940.1
Mago nashi-like protein [source-UniProtKB/TrEMBL;Acc-Q0ZCF1_POPTR] (256 aa)
     
  0.997
POPTR_0003s01570.1
Uncharacterized protein (177 aa)
     
  0.992
POPTR_0001s21640.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PH40_POPTR] (210 aa)
     
  0.992
POPTR_0007s07910.1
Predicted protein (407 aa)
     
  0.975
POPTR_0018s07650.1
Predicted protein (413 aa)
     
  0.966
POPTR_0003s04150.1
Predicted protein (413 aa)
     
  0.965
POPTR_0001s20480.1
Predicted protein (413 aa)
     
  0.965
POPTR_0010s10230.1
Predicted protein (477 aa)
     
  0.964
POPTR_0006s24220.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PA36_POPTR] (413 aa)
     
  0.964
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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