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POPTR_0001s33800.1 POPTR_0001s33800.1 POPTR_0001s28660.1 POPTR_0001s28660.1 POPTR_0018s02430.1 POPTR_0018s02430.1 POPTR_0025s00610.1 POPTR_0025s00610.1 POPTR_0018s02760.1 POPTR_0018s02760.1 POPTR_0006s27930.1 POPTR_0006s27930.1 POPTR_0006s28190.1 POPTR_0006s28190.1 POPTR_0001s17000.1 POPTR_0001s17000.1 POPTR_0006s08360.1 POPTR_0006s08360.1 POPTR_0017s09900.1 POPTR_0017s09900.1 POPTR_0003s06290.1 POPTR_0003s06290.1
"POPTR_0001s28660.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s28660.1Predicted protein (178 aa)    
Predicted Functional Partners:
POPTR_0017s09900.1
Predicted protein; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex functions in docking exp [...] (115 aa)
     
  0.970
POPTR_0001s33800.1
Predicted protein; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex functions in docking exp [...] (112 aa)
     
  0.970
POPTR_0018s02430.1
Predicted protein (675 aa)
       
  0.968
POPTR_0006s27930.1
Predicted protein (675 aa)
       
  0.968
POPTR_0018s02760.1
Predicted protein (553 aa)
     
  0.966
POPTR_0006s28190.1
Predicted protein (518 aa)
     
  0.965
POPTR_0006s08360.1
Annotation not available (293 aa)
       
  0.965
POPTR_0003s06290.1
Predicted protein (655 aa)
       
  0.965
POPTR_0025s00610.1
Uncharacterized protein (587 aa)
       
  0.964
POPTR_0001s17000.1
Predicted protein (656 aa)
       
  0.960
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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