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POPTR_0005s09260.1 POPTR_0005s09260.1 POPTR_1248s00200.1 POPTR_1248s00200.1 POPTR_0015s12330.1 POPTR_0015s12330.1 POPTR_0012s05460.1 POPTR_0012s05460.1 POPTR_0001s31400.1 POPTR_0001s31400.1 POPTR_0004s18230.1 POPTR_0004s18230.1 POPTR_0011s04370.1 POPTR_0011s04370.1 POPTR_0010s07660.1 POPTR_0010s07660.1 POPTR_0010s07510.1 POPTR_0010s07510.1 POPTR_0008s17270.1 POPTR_0008s17270.1 POPTR_0008s17140.1 POPTR_0008s17140.1
"POPTR_0001s31400.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s31400.1Predicted protein (300 aa)    
Predicted Functional Partners:
POPTR_0008s17140.1
Predicted protein (524 aa)
   
 
      0.956
POPTR_0010s07660.1
Predicted protein (524 aa)
   
 
      0.956
POPTR_0012s05460.1
Predicted protein (965 aa)
       
 
  0.950
POPTR_0008s17270.1
Predicted protein (593 aa)
   
   
0.930
POPTR_0010s07510.1
Predicted protein (574 aa)
   
   
0.929
POPTR_0004s18230.1
Predicted protein (308 aa)
     
      0.770
POPTR_0005s09260.1
Predicted protein (159 aa)
       
      0.752
POPTR_1248s00200.1
Uncharacterized protein (170 aa)
       
      0.705
POPTR_0015s12330.1
Predicted protein; Phosphodiesterase responsible for the U6 snRNA 3’ end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA (290 aa)
       
      0.705
POPTR_0011s04370.1
Predicted protein (261 aa)
       
      0.697
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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