Full Link:
close STRING Website Improvement Campaign
deny allow Over the next 24 hours, we are collecting usage information on the web-interface (learn more).   Do you allow anonymous tracking of your activity ?
STRINGSTRING
POPTR_0001s09890.1 POPTR_0001s09890.1 TOP6A TOP6A POPTR_0001s37540.1 POPTR_0001s37540.1 POPTR_0001s41800.1 POPTR_0001s41800.1 POPTR_0001s32760.1 POPTR_0001s32760.1 POPTR_0014s06530.1 POPTR_0014s06530.1 POPTR_0015s04270.1 POPTR_0015s04270.1 POPTR_0004s18540.1 POPTR_0004s18540.1 POPTR_0011s10840.1 POPTR_0011s10840.1 POPTR_0011s10870.1 POPTR_0011s10870.1 POPTR_0002s14910.1 POPTR_0002s14910.1
"POPTR_0001s32760.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s32760.1Predicted protein (1316 aa)    
Predicted Functional Partners:
POPTR_0001s41800.1
Predicted protein (747 aa)
   
  0.997
POPTR_0004s18540.1
Predicted protein (2740 aa)
     
  0.983
POPTR_0011s10870.1
Predicted protein (628 aa)
     
  0.982
POPTR_0014s06530.1
Predicted protein; Single-stranded DNA-dependent ATP-dependent helicase (700 aa)
     
  0.978
POPTR_0002s14910.1
ATP-dependent DNA helicase 2 subunit KU80 ; Single-stranded DNA-dependent ATP-dependent helicase (656 aa)
     
  0.978
POPTR_0011s10840.1
Uncharacterized protein (115 aa)
     
  0.978
POPTR_0001s37540.1
Predicted protein (365 aa)
     
  0.973
TOP6A
Predicted protein; Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity (423 aa)
     
  0.972
POPTR_0001s09890.1
Uncharacterized protein (331 aa)
     
  0.972
POPTR_0015s04270.1
Hypothetical protein (504 aa)
     
  0.971
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (8%)