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POPTR_0010s07900.1 POPTR_0010s07900.1 POPTR_0004s04100.1 POPTR_0004s04100.1 POPTR_0005s12700.1 POPTR_0005s12700.1 POPTR_0007s12550.1 POPTR_0007s12550.1 POPTR_0011s04990.1 POPTR_0011s04990.1 POPTR_0001s33410.1 POPTR_0001s33410.1 POPTR_0002s09250.1 POPTR_0002s09250.1 POPTR_0019s07570.1 POPTR_0019s07570.1 POPTR_0014s17390.1 POPTR_0014s17390.1 POPTR_0005s16460.1 POPTR_0005s16460.1 POPTR_0001s16090.1 POPTR_0001s16090.1
"POPTR_0001s33410.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s33410.1Predicted protein (1576 aa)    
Predicted Functional Partners:
POPTR_0019s07570.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P7W0_POPTR] (538 aa)
           
  0.647
POPTR_0005s16460.1
F-box family protein (474 aa)
           
  0.625
POPTR_0002s09250.1
Predicted protein (474 aa)
           
  0.625
POPTR_0010s07900.1
Predicted protein (506 aa)
     
 
  0.559
POPTR_0007s12550.1
Predicted protein (563 aa)
     
 
  0.559
POPTR_0011s04990.1
Predicted protein (395 aa)
     
 
  0.548
POPTR_0005s12700.1
Predicted protein (588 aa)
     
 
  0.548
POPTR_0004s04100.1
Predicted protein (545 aa)
     
 
  0.548
POPTR_0014s17390.1
Hypothetical protein (287 aa)
           
  0.527
POPTR_0001s16090.1
Predicted protein (428 aa)
           
  0.426
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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