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POPTR_0175s00210.1 POPTR_0175s00210.1 POPTR_0001s27640.1 POPTR_0001s27640.1 POPTR_0009s06860.1 POPTR_0009s06860.1 POPTR_0018s06650.1 POPTR_0018s06650.1 POPTR_0007s07470.1 POPTR_0007s07470.1 POPTR_0005s09240.1 POPTR_0005s09240.1 POPTR_0001s34500.1 POPTR_0001s34500.1 POPTR_0008s09700.1 POPTR_0008s09700.1 POPTR_0016s06750.1 POPTR_0016s06750.1 POPTR_0001s06360.1 POPTR_0001s06360.1 POPTR_0003s19810.1 POPTR_0003s19810.1
"POPTR_0001s34500.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s34500.1Predicted protein (128 aa)    
Predicted Functional Partners:
POPTR_0008s09700.1
Predicted protein (511 aa)
       
      0.919
POPTR_0007s07470.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P9R0_POPTR] (158 aa)
   
 
  0.722
POPTR_0005s09240.1
Predicted protein (158 aa)
   
 
  0.722
POPTR_0003s19810.1
Uridine 5’-monophosphate synthase family protein (452 aa)
       
      0.590
POPTR_0001s06360.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHV8_POPTR] (475 aa)
       
      0.590
POPTR_0016s06750.1
Predicted protein; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin (133 aa)
       
      0.575
POPTR_0018s06650.1
Predicted protein (120 aa)
   
        0.498
POPTR_0009s06860.1
Predicted protein (170 aa)
   
        0.498
POPTR_0001s27640.1
Predicted protein (122 aa)
   
        0.498
POPTR_0175s00210.1
Uncharacterized protein (98 aa)
   
        0.466
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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