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POPTR_0006s12280.1 POPTR_0006s12280.1 POPTR_0002s13930.1 POPTR_0002s13930.1 POPTR_0022s00340.1 POPTR_0022s00340.1 POPTR_0004s23520.1 POPTR_0004s23520.1 POPTR_0001s35110.1 POPTR_0001s35110.1 POPTR_0003s07970.1 POPTR_0003s07970.1 POPTR_0016s03000.1 POPTR_0016s03000.1 POPTR_0014s04830.1 POPTR_0014s04830.1 POPTR_0001s11720.1 POPTR_0001s11720.1 POPTR_0001s15280.1 POPTR_0001s15280.1 POPTR_0001s11710.1 POPTR_0001s11710.1
"POPTR_0001s35110.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s35110.1Uncharacterized protein (115 aa)    
Predicted Functional Partners:
POPTR_0006s12280.1
Predicted protein (830 aa)
       
      0.682
POPTR_0022s00340.1
Uncharacterized protein (307 aa)
       
 
  0.680
POPTR_0014s04830.1
Predicted protein (203 aa)
       
 
  0.680
POPTR_0004s23520.1
Predicted protein (201 aa)
       
 
  0.680
POPTR_0003s07970.1
Predicted protein (203 aa)
       
 
  0.680
POPTR_0002s13930.1
Predicted protein (203 aa)
       
 
  0.680
POPTR_0001s15280.1
Predicted protein (203 aa)
       
 
  0.680
POPTR_0001s11720.1
Hypothetical protein (166 aa)
       
 
  0.680
POPTR_0001s11710.1
Uncharacterized protein (114 aa)
       
 
  0.680
POPTR_0016s03000.1
Uncharacterized protein (231 aa)
       
      0.478
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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