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POPTR_0001s35490.1 POPTR_0001s35490.1 POPTR_0016s07310.1 POPTR_0016s07310.1 POPTR_0006s22150.1 POPTR_0006s22150.1 RBL901 RBL901 POPTR_0009s16350.1 POPTR_0009s16350.1 POPTR_0004s21100.1 POPTR_0004s21100.1
"POPTR_0001s35490.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s35490.1Uncharacterized protein (409 aa)    
Predicted Functional Partners:
RBL901
Retinoblastoma-related protein [source-UniProtKB/Swiss-Prot;Acc-RBR_POPTR]; Regulator of biological processes that recruits a histone deacetylase to control gene transcription. May play a role in the entry into mitosis, negatively regulating the cell proliferation. Formation of stable complexes with geminiviridae replication-associated proteins may create a cellular environment which favors viral DNA replication (By similarity) (1035 aa)
           
  0.454
POPTR_0016s07310.1
Transcription factor E2F [source-UniProtKB/TrEMBL;Acc-B9IIN5_POPTR] (445 aa)
           
  0.447
POPTR_0009s16350.1
Transcription factor E2F [source-UniProtKB/TrEMBL;Acc-B9HQ23_POPTR] (473 aa)
           
  0.447
POPTR_0006s22150.1
Transcription factor E2F [source-UniProtKB/TrEMBL;Acc-B9HBQ9_POPTR] (424 aa)
           
  0.447
POPTR_0004s21100.1
Transcription factor E2F [source-UniProtKB/TrEMBL;Acc-B9MYV3_POPTR] (474 aa)
           
  0.447
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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