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POPTR_0008s21070.1 POPTR_0008s21070.1 POPTR_0010s00530.1 POPTR_0010s00530.1 POPTR_0014s18340.1 POPTR_0014s18340.1 POPTR_0008s21080.1 POPTR_0008s21080.1 POPTR_0001s36660.1 POPTR_0001s36660.1 POPTR_0003s06080.1 POPTR_0003s06080.1 POPTR_0011s12560.1 POPTR_0011s12560.1 POPTR_0007s11610.1 POPTR_0007s11610.1 POPTR_0017s03930.1 POPTR_0017s03930.1 POPTR_0014s12670.1 POPTR_0014s12670.1 POPTR_0009s04860.1 POPTR_0009s04860.1
"POPTR_0001s36660.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s36660.1Predicted protein (143 aa)    
Predicted Functional Partners:
POPTR_0010s00530.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGG7_POPTR] (623 aa)
   
          0.505
POPTR_0008s21080.1
Hypothetical protein (314 aa)
   
          0.503
POPTR_0011s12560.1
Predicted protein (298 aa)
     
        0.499
POPTR_0003s06080.1
Uncharacterized protein (89 aa)
     
        0.499
POPTR_0014s12670.1
Predicted protein (217 aa)
   
        0.493
POPTR_0014s18340.1
Predicted protein (541 aa)
   
          0.488
POPTR_0008s21070.1
Annotation not available (249 aa)
   
          0.486
POPTR_0009s04860.1
Predicted protein (405 aa)
     
        0.483
POPTR_0007s11610.1
Predicted protein (537 aa)
     
        0.483
POPTR_0017s03930.1
Predicted protein (391 aa)
     
        0.470
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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