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AT5G43930 AT5G43930 ATG6 ATG6 AT4G15930 AT4G15930 VPS34 VPS34 VPS15 VPS15 AT1G04140 AT1G04140 EBF1 EBF1 AT5G49430 AT5G49430 AT1G65030 AT1G65030 AT3G45620 AT3G45620 AT2G47410 AT2G47410
"AT1G04140" - transducin/WD-40 repeat-containing protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G04140transducin/WD-40 repeat-containing protein (793 aa)    
Predicted Functional Partners:
ATG6
AUTOPHAGY 6 (517 aa)
     
  0.943
VPS34
Vacuolar protein sorting 34 (814 aa)
     
  0.943
AT5G43930
transducin/WD40 domain-containing protein (752 aa)
     
 
 
0.921
VPS15
Vacuolar protein sorting 15 (1494 aa)
     
 
  0.921
AT4G15930
Dynein light chain LC8-type (123 aa)
       
    0.908
AT2G47410
WD40/YVTN repeat-like-containing domain (1520 aa)
     
   
  0.826
AT3G45620
transducin/WD40 domain-containing protein (515 aa)
           
  0.801
AT1G65030
WD40 domain-containing protein (345 aa)
           
  0.801
AT5G49430
WD40/YVTN repeat-like-containing domain;Bromodomain (1677 aa)
     
   
  0.741
EBF1
EIN3-binding F box protein 1; Component of SCF(EBF1) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (probably including EIN3 and EIL1). Regulator of the ethylene signaling cascade by modulating the stability of EIN3 and EIL1 proteins. Confers insensitivity to ethylene (628 aa)
     
        0.648
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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