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NRPD2A NRPD2A NRPB2 NRPB2 AT1G04790 AT1G04790 AT5G15400 AT5G15400 AT2G36170 AT2G36170 UBC37 UBC37 UBC30 UBC30 AT3G29130 AT3G29130 UBQ1 UBQ1 UBC10 UBC10 UBC8 UBC8
"AT1G04790" - RING/U-box superfamily protein in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G04790RING/U-box superfamily protein (634 aa)    
Predicted Functional Partners:
NRPB2
DNA-directed RNA polymerase II subunit RPB2; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. NRPB2 is [...] (1188 aa)
     
 
  0.672
AT3G29130
Uncharacterized protein (168 aa)
       
      0.618
NRPD2A
Nuclear RNA polymerase D2A; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest component of RNA polymerases IV and V which mediate short-interfering RNAs (siRNA) accumulation and subsequent RNA-directed DNA methylation-dependent (RdDM) transcriptional gene silencing (TGS) of endogenous repeated sequences, including transposable elements. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Also required for full [...] (1172 aa)
     
 
  0.552
UBQ1
60S ribosomal protein L40-2; Ubiquitin- exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked- Lys-11-linked is involved in ERA [...] (128 aa)
       
 
  0.548
AT2G36170
60S ribosomal protein L40-2; Ubiquitin- exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked- Lys-11-linked is involved in ERA [...] (128 aa)
       
 
  0.548
AT5G15400
U-box domain-containing protein; Ubiquitin-protein ligase that may function as an E3 ligase in conjunction with specific E1 and E2 ligases. May also function as an E4 ligase mediating the assembly of polyubiquitin chain assembly on substrates monoubiquitinated by another E3 ubiquitin ligase (1038 aa)
     
   
  0.539
UBC37
Ubiquitin-conjugating enzyme 37; Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins (409 aa)
     
 
  0.529
UBC30
Ubiquitin-conjugating enzyme 30; Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins (148 aa)
       
 
  0.528
UBC10
Ubiquitin-conjugating enzyme 10; Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. Mediates the selective degradation of short-lived and abnormal proteins (148 aa)
       
 
  0.528
UBC8
Ubiquitin conjugating enzyme 8; Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. Mediates the selective degradation of short-lived and abnormal proteins (149 aa)
       
 
  0.528
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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