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STRINGSTRING
AT5G28220 AT5G28220 AT3G24530 AT3G24530 AT1G58420 AT1G58420 AT1G10660 AT1G10660 AtCDC48C AtCDC48C AtCDC48B AtCDC48B AT1G04850 AT1G04850 CDC48 CDC48 AT4G04180 AT4G04180 AT3G15120 AT3G15120 CDC48B CDC48B
"AT1G04850" - Ubiquitin-associated in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G04850Ubiquitin-associated (UBA)/TS-N domain-containing protein (413 aa)    
Predicted Functional Partners:
CDC48
Cell division cycle 48; Probably functions in cell division and growth processes. Interacts with certain SNAREs as part of specialized membrane fusion events where vesicles from the same organelle fuse (homotypic fusion) (By similarity) (809 aa)
     
 
  0.922
AtCDC48C
Cell division cycle 48C; Probably functions in cell division and growth processes. Interacts with certain SNAREs as part of specialized membrane fusion events where vesicles from the same organelle fuse (homotypic fusion) (By similarity) (810 aa)
     
 
  0.907
AT4G04180
AAA-type ATPase family protein (609 aa)
       
 
  0.904
AtCDC48B
Cell division cycle 48B; Probably functions in cell division and growth processes. Interacts with certain SNAREs as part of specialized membrane fusion events where vesicles from the same organelle fuse (homotypic fusion) (By similarity) (815 aa)
       
 
  0.904
AT3G24530
AAA-type ATPase family protein / ankyrin repeat family protein (481 aa)
       
 
  0.904
CDC48B
Cell division cycle 48B; Probably functions in cell division and growth processes. Interacts with certain SNAREs as part of specialized membrane fusion events where vesicles from the same organelle fuse (homotypic fusion) (By similarity) (603 aa)
       
 
  0.904
AT3G15120
AAA-type ATPase family protein (1954 aa)
       
 
  0.853
AT1G58420
Uncharacterized protein (179 aa)
           
  0.810
AT1G10660
Uncharacterized protein (320 aa)
           
  0.806
AT5G28220
O-linked GlcNAc transferase-like protein (316 aa)
     
      0.742
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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