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ALY2 ALY2 AT5G53140 AT5G53140 DGS1 DGS1 AT1G08800 AT1G08800 AT3G53690 AT3G53690 AT4G39960 AT4G39960 AT1G10310 AT1G10310 EMB3101 EMB3101 CJD1 CJD1 AT2G22100 AT2G22100 SKL2 SKL2
"EMB3101" - EMBRYO DEFECTIVE 3101 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EMB3101EMBRYO DEFECTIVE 3101 (504 aa)    
Predicted Functional Partners:
CJD1
Chloroplast J-like domain 1 (294 aa)
       
 
  0.883
AT3G53690
RING/U-box superfamily protein (320 aa)
           
  0.866
AT1G08800
Uncharacterized protein; Membrane-anchored myosin receptors that define a distinct, plant-specific transport vesicle compartment (1113 aa)
           
  0.810
AT1G10310
Rossmann-fold NAD(P)-binding domain-containing protein; NADPH-dependent pterin aldehyde reductase involved in pterin aldehyde salvage during folate turnover. Catalyzes the reduction of diverse aromatic and aliphatic aldehydes (e.g. acetaldehyde, n-propanal, 1-naphthaldehyde, benzaldehyde, cinnamaldehyde, n-butanal, n-hexanal, n-pentanal, 2- naphthaldehyde, n-octanal, n-nonanal and n-heptanal), in addition to the conversion of pterin-6-aldehyde (PtCHO) to 6- hydroxymethylpterin (PtCH(2)OH), and the conversion of dihydropterin-6-aldehyde (H(2)PtCHO) to 6- hydroxymethyldihydropterin (H(2) [...] (242 aa)
           
  0.808
AT5G53140
Putative protein phosphatase 2C 76 (420 aa)
           
  0.733
ALY2
ALWAYS EARLY 2 (1052 aa)
           
  0.710
AT2G22100
RNA-binding (RRM/RBD/RNP motifs) family protein; Acts as component of a complex regulating the turnover of mRNAs in the nucleus. Binds with high affinity to RNA molecules that contain U-rich sequences in 3’-UTRs. May function in complex with UBP1 and contribute to the stabilization of mRNAs in the nucleus (By similarity) (382 aa)
       
 
  0.690
DGS1
DGD1 SUPPRESSOR 1; Involved in galactoglycerolipid biosynthesis. May contribute to an intracellular signal that regulates an alternative DGD1-independent galactoglycerolipid biosynthesis pathway in chloroplasts (602 aa)
           
  0.674
AT4G39960
Molecular chaperone Hsp40/DnaJ family protein (447 aa)
           
  0.670
SKL2
Shikimate kinase like 2 (387 aa)
           
  0.670
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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