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AT5G11240 AT5G11240 YAO YAO EMB2271 EMB2271 IMP4 IMP4 EMB2762 EMB2762 AT4G02400 AT4G02400 AT5G61330 AT5G61330 AT3G09720 AT3G09720 AT1G07840 AT1G07840 AT5G04600 AT5G04600 EDA7 EDA7
"AT1G07840" - Sas10/Utp3/C1D family in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G07840Sas10/Utp3/C1D family (312 aa)    
Predicted Functional Partners:
AT5G61330
rRNA processing protein-related (436 aa)
     
 
  0.999
AT5G04600
RNA recognition motif-containing protein (222 aa)
     
 
  0.998
EDA7
Embryo sac development arrest 7 (711 aa)
     
 
  0.998
EMB2762
CCAAT-binding factor (577 aa)
     
      0.996
YAO
YAOZHE; Component of a nucleolar small nuclear ribonucleoprotein particle (snoRNP) thought to participate in the processing and modification of pre-ribosomal RNA (By similarity). Essential for embryogenesis. Plays a critical role in embryo sac development and gametic cell fate. Required for the correct positioning of the first division plane of zygote. May function during early embryogenesis (PubMed-20699009) (504 aa)
     
   
  0.992
AT3G09720
DEAD-box ATP-dependent RNA helicase 57 (541 aa)
     
   
  0.992
AT4G02400
U3 ribonucleoprotein-like protein (855 aa)
     
   
  0.988
EMB2271
EMBRYO DEFECTIVE 2271; Component of a nucleolar small nuclear ribonucleoprotein particle (snoRNP) thought to participate in the processing and modification of pre-ribosomal RNA (By similarity). Essential for embryogenesis (By similarity). May function during late embryogenesis (PubMed-20699009) (479 aa)
     
   
  0.988
IMP4
Ribosomal RNA processing Brix domain protein (294 aa)
     
   
  0.988
AT5G11240
transducin/WD40 domain-containing protein (615 aa)
     
 
  0.988
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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