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SNL2 SNL2 MIS12 MIS12 SSP4 SSP4 EDA35 EDA35 AT1G06790 AT1G06790 SCRL3 SCRL3 AT4G13230 AT4G13230 AT3G51070 AT3G51070 COPT4 COPT4 AT3G59455 AT3G59455 CLE20 CLE20
"SCRL3" - SCR-like 3 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCRL3SCR-like 3 (88 aa)    
Predicted Functional Partners:
SSP4
SCP1-like small phosphatase 4 (456 aa)
           
  0.677
MIS12
MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE; Constitutive component of kinetochores that is essential for proper cell division during mitotic cell cycle (Probable). May play a role in the modulation of centromere during meiosis (PubMed-21695238) (238 aa)
           
  0.670
EDA35
Embryo sac development arrest 35; Required for S phase entry of the cell cycle (333 aa)
           
  0.605
COPT4
Copper transporter 4; Involved in the transport of copper (145 aa)
           
  0.557
AT1G06790
RNA polymerase Rpb7 N-terminal domain-containing protein (204 aa)
           
  0.555
SNL2
SIN3-like 2; Acts as a transcriptional repressor. Plays roles in regulating gene expression and genome stability (By similarity) (1367 aa)
           
  0.491
CLE20
CLAVATA3/ESR-RELATED 20; Extracellular signal peptide that regulates cell fate. Represses root apical meristem maintenance (83 aa)
           
  0.447
AT4G13230
Late embryogenesis abundant domain-containing protein (120 aa)
     
        0.437
AT3G59455
Encodes a Protease inhibitor/seed storage/LTP family protein (96 aa)
     
        0.437
AT3G51070
Putative methyltransferase PMT27 (895 aa)
     
        0.436
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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