Full Link:
STRINGSTRING
AT5G54940 AT5G54940 AT5G11900 AT5G11900 AT5G54760 AT5G54760 AT4G27130 AT4G27130 AT1G09150 AT1G09150 AT1G54290 AT1G54290 LSM6B LSM6B AT4G30330 AT4G30330 smB smB AT2G47640 AT2G47640 LSM6A LSM6A
"AT1G09150" - Pseudouridine synthase and archaeosine transglycosylase domain-containing protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G09150Pseudouridine synthase and archaeosine transglycosylase domain-containing protein (181 aa)    
Predicted Functional Partners:
AT5G11900
Translation initiation factor SUI1 family protein (198 aa)
     
 
  0.989
AT5G54940
Translation initiation factor SUI1 family protein (112 aa)
     
 
  0.866
AT5G54760
Translation initiation factor SUI1 family protein (113 aa)
     
 
  0.866
AT4G27130
Protein translation factor SUI1-1; Probably involved in translation (113 aa)
     
 
  0.866
AT1G54290
Protein translation factor SUI1-2; Probably involved in translation (113 aa)
     
 
  0.866
LSM6B
SM-like 6B; Component of LSM protein complexes, which are involved in RNA processing. Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation by promoting decapping and leading to accurate 5’-3’ mRNA decay. The cytoplasmic LSM1-LSM7 complex regulates developmental gene expression by the decapping of specific development-related transcripts. Component of the nuclear LSM2-LSM8 complex which is involved splicing nuclear mRNAs. LSM2-LSM8 binds directly to the U6 small nuclear RNAs (snRNAs) and is essential for accurate splicing of selected development-related m [...] (91 aa)
   
        0.674
AT2G47640
Small nuclear ribonucleoprotein D2 (109 aa)
   
        0.640
smB
Small nuclear ribonucleoprotein associated protein B (257 aa)
   
        0.622
AT4G30330
Small nuclear ribonucleoprotein E (88 aa)
   
        0.596
LSM6A
SM-like 6A; Component of LSM protein complexes, which are involved in RNA processing. Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation by promoting decapping and leading to accurate 5’-3’ mRNA decay. The cytoplasmic LSM1-LSM7 complex regulates developmental gene expression by the decapping of specific development-related transcripts. Component of the nuclear LSM2-LSM8 complex which is involved splicing nuclear mRNAs. LSM2-LSM8 binds directly to the U6 small nuclear RNAs (snRNAs) and is essential for accurate splicing of selected development-related m [...] (91 aa)
   
        0.593
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (1%)