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AT5G64010 AT5G64010 AT2G02160 AT2G02160 AT1G73760 AT1G73760 AT3G51120 AT3G51120 AT5G47430 AT5G47430 AT4G37500 AT4G37500 AT1G73970 AT1G73970 AT5G21950 AT5G21950 AT1G09910 AT1G09910 AT1G14260 AT1G14260 SYTC SYTC
"AT1G09910" - Rhamnogalacturonate lyase-like protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G09910Rhamnogalacturonate lyase-like protein (675 aa)    
Predicted Functional Partners:
SYTC
Calcium-dependent lipid-binding domain-containing protein; May be involved in membrane trafficking (540 aa)
           
  0.502
AT1G73970
Uncharacterized protein (803 aa)
     
   
  0.447
AT3G51120
Zinc finger CCCH domain-containing protein 44 (1292 aa)
     
   
  0.442
AT2G02160
CCCH-type zinc finger family protein (669 aa)
     
   
  0.435
AT1G14260
RING/FYVE/PHD zinc finger-containing protein (265 aa)
           
  0.422
AT5G47430
DWNN domain, a CCHC-type zinc finger (892 aa)
     
   
  0.420
AT5G21950
Hydrolase, alpha/beta fold family protein (308 aa)
           
  0.408
AT4G37500
Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein (124 aa)
           
  0.408
AT1G73760
RING/U-box superfamily protein (367 aa)
           
  0.408
AT5G64010
Uncharacterized protein (236 aa)
           
  0.408
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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