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AT1G10320 AT1G10320 ATU2AF65A ATU2AF65A AT2G33440 AT2G33440 RS2Z33 RS2Z33 EMB2770 EMB2770 SC35 SC35 SR30 SR30 SR34 SR34 AT2G33435 AT2G33435 AT1G60900 AT1G60900 AT1G60830 AT1G60830
"AT1G10320" - Zinc finger CCCH domain-containing protein 5 in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G10320Zinc finger CCCH domain-containing protein 5 (757 aa)    
Predicted Functional Partners:
AT1G60900
Splicing factor U2af large subunit B; Necessary for the splicing of pre-mRNA (589 aa)
     
  0.975
ATU2AF65A
Splicing factor U2af large subunit A; Necessary for the splicing of pre-mRNA (573 aa)
     
  0.973
AT2G33440
RNA recognition motif-containing protein (322 aa)
     
 
  0.955
AT2G33435
RNA recognition motif-containing protein (979 aa)
     
 
  0.952
AT1G60830
RNA recognition motif-containing protein (111 aa)
     
 
  0.952
SC35
Ortholog of human splicing factor SC35; Probably involved in intron recognition and spliceosome assembly, but not involved in alternative splicing regulation of the SCL33 intron (303 aa)
     
  0.950
SR30
Splicing factor, arginine/serine-rich 1/9; Regulatory splicing factor that modulates alternative splicing and gene expression in specific cell types. Autoregulates its own expression. Probably involved in intron recognition and spliceosome assembly (268 aa)
     
  0.948
RS2Z33
Arginine/serine-rich zinc knuckle-containing protein 33; Splicing factor involved in constitutive and/or alternative splicing. Regulates the splicing of its own pre-mRNA and the alternative splicing of RS30, RS31 and RS34. Associates the cyclin-depedent kinase G1 (CDKG1) with the spliceosome and recruits it to U1 snRNP to facilitate splicing (290 aa)
     
  0.947
EMB2770
EMBRYO DEFECTIVE 2770; Pre-mRNA splicing factor required for splicing and for the turnover of unstable transcripts. May be a U5 snRNP-associated protein involved in the formation of U4/U6-U5 tri-snRNP. Involved in responses to abiotic stresses. Involved in microRNAs (miRNAs) biogenesis by functioning in primary miRNAs (pri-miRNAs) splicing. Required for DNA methylation and transcriptional silencing through the RNA-directed DNA methylation (RdDM) pathway (1029 aa)
     
  0.944
SR34
Pre-mRNA-splicing factor SF2; General splicing factor. Can promote splice site selection in vitro presumably by antagonizing the effects of the A1 heterogeneous nuclear ribonucleoprotein. May have an essential function during early plant development (303 aa)
     
  0.936
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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